Table 2 Average running time (in seconds) of LASSIE required for the execution of a set of 30 synthetic reaction-based models of size M×N (with M≠N), considering 10, 50, 100, 500, 1000 samples of the system dynamics of all chemical species
From: LASSIE: simulating large-scale models of biochemical systems on GPUs
10 samples | 50 samples | 100 samples | 500 samples | 1000 samples | |
|---|---|---|---|---|---|
M×N | LASSIE | LASSIE | LASSIE | LASSIE | LASSIE |
171×512 | 0.589 | 0.623 | 0.662 | 0.900 | 1.149 |
512×171 | 1.032 | 1.062 | 1.087 | 1.318 | 1.540 |
341×1024 | 0.682 | 0.751 | 0.828 | 1.285 | 1.726 |
1024×341 | 1.119 | 1.179 | 1.220 | 1.597 | 1.895 |
512×1024 | 0.759 | 0.828 | 0.941 | 1.419 | 1.949 |
1024×512 | 1.053 | 1.112 | 1.192 | 1.624 | 1.999 |
683×2048 | 0.876 | 1.064 | 1.310 | 2.442 | 3.533 |
2048×683 | 1.389 | 1.512 | 1.664 | 2.406 | 3.029 |
1024×2048 | 1.002 | 1.201 | 1.508 | 2.858 | 3.889 |
2048×1024 | 1.317 | 1.444 | 1.613 | 2.614 | 3.281 |