TY - JOUR AU - Yooseph, S. AU - Sutton, G. AU - Rusch, D. B. AU - Halpern, A. L. AU - Williamson, S. J. AU - Remington, K. PY - 2007 DA - 2007// TI - The Sorcerer II Global Ocean Sampling expedition: Expanding the universe of protein families JO - PLoS Biol VL - 5 UR - https://doi.org/10.1371/journal.pbio.0050016 DO - 10.1371/journal.pbio.0050016 ID - Yooseph2007 ER - TY - JOUR AU - Koonin, E. V. PY - 2007 DA - 2007// TI - Metagenomic sorcery and the expanding protein universe JO - Nat Biotechnol VL - 25 UR - https://doi.org/10.1038/nbt0507-540 DO - 10.1038/nbt0507-540 ID - Koonin2007 ER - TY - JOUR AU - Mitchell, A. AU - Chang, H. -. Y. AU - Daugherty, L. AU - Fraser, M. AU - Hunter, S. AU - Lopez, R. PY - 2015 DA - 2015// TI - The InterPro protein families database: the classification resource after 15 years JO - Nucleic Acids Res VL - 43 UR - https://doi.org/10.1093/nar/gku1243 DO - 10.1093/nar/gku1243 ID - Mitchell2015 ER - TY - JOUR AU - Sharon, I. AU - Battchikova, N. AU - Aro, E. -. M. AU - Giglione, C. AU - Meinnel, T. AU - Glaser, F. PY - 2011 DA - 2011// TI - Comparative metagenomics of microbial traits within oceanic viral communities JO - ISME J VL - 5 UR - https://doi.org/10.1038/ismej.2011.2 DO - 10.1038/ismej.2011.2 ID - Sharon2011 ER - TY - JOUR AU - Radivojac, P. AU - Clark, W. T. AU - Oron, T. R. AU - Schnoes, A. M. AU - Wittkop, T. AU - Sokolov, A. PY - 2013 DA - 2013// TI - A large-scale evaluation of computational protein function prediction JO - Nat Methods VL - 10 UR - https://doi.org/10.1038/nmeth.2340 DO - 10.1038/nmeth.2340 ID - Radivojac2013 ER - TY - JOUR AU - Punta, M. AU - Coggill, P. C. AU - Eberhardt, R. Y. AU - Mistry, J. AU - Tate, J. AU - Boursnell, C. PY - 2012 DA - 2012// TI - The Pfam protein families database JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gkr1065 DO - 10.1093/nar/gkr1065 ID - Punta2012 ER - TY - JOUR AU - Haft, D. H. AU - Selengut, J. D. AU - White, O. PY - 2003 DA - 2003// TI - The TIGRFAMs database of protein families JO - Nucleic Acids Res VL - 31 UR - https://doi.org/10.1093/nar/gkg128 DO - 10.1093/nar/gkg128 ID - Haft2003 ER - TY - JOUR AU - Eddy, S. R. PY - 2011 DA - 2011// TI - Accelerated Profile HMM Searches JO - PLoS Comput Biol VL - 7 UR - https://doi.org/10.1371/journal.pcbi.1002195 DO - 10.1371/journal.pcbi.1002195 ID - Eddy2011 ER - TY - JOUR AU - Van Dongen, S. AU - Abreu-Goodger, C. PY - 2012 DA - 2012// TI - Using MCL to extract clusters from networks JO - Methods Mol Biol VL - 804 UR - https://doi.org/10.1007/978-1-61779-361-5_15 DO - 10.1007/978-1-61779-361-5_15 ID - Van Dongen2012 ER - TY - JOUR AU - Katoh, K. AU - Misawa, K. AU - Kuma, K. -. I. AU - Miyata, T. PY - 2002 DA - 2002// TI - MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform JO - Nucleic Acids Res VL - 30 UR - https://doi.org/10.1093/nar/gkf436 DO - 10.1093/nar/gkf436 ID - Katoh2002 ER - TY - JOUR AU - Gouveia-Oliveira, R. AU - Sackett, P. W. AU - Pedersen, A. G. PY - 2007 DA - 2007// TI - MaxAlign: maximizing usable data in an alignment JO - BMC Bioinformatics VL - 8 UR - https://doi.org/10.1186/1471-2105-8-312 DO - 10.1186/1471-2105-8-312 ID - Gouveia-Oliveira2007 ER - TY - JOUR AU - Edgar, R. C. PY - 2004 DA - 2004// TI - MUSCLE: a multiple sequence alignment method with reduced time and space complexity JO - BMC Bioinformatics VL - 5 UR - https://doi.org/10.1186/1471-2105-5-113 DO - 10.1186/1471-2105-5-113 ID - Edgar2004 ER - TY - JOUR AU - Talavera, G. AU - Castresana, J. PY - 2007 DA - 2007// TI - Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments JO - Syst Biol VL - 56 UR - https://doi.org/10.1080/10635150701472164 DO - 10.1080/10635150701472164 ID - Talavera2007 ER - TY - JOUR AU - Wu, M. AU - Chatterji, S. AU - Eisen, J. A. PY - 2012 DA - 2012// TI - Accounting for alignment uncertainty in phylogenomics JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0030288 DO - 10.1371/journal.pone.0030288 ID - Wu2012 ER - TY - JOUR AU - Zhang, Y. AU - Sun, Y. AU - Cole, J. R. PY - 2013 DA - 2013// TI - A Sensitive and Accurate protein domain cLassification Tool (SALT) for short reads JO - Bioinformatics VL - 29 UR - https://doi.org/10.1093/bioinformatics/btt357 DO - 10.1093/bioinformatics/btt357 ID - Zhang2013 ER - TY - JOUR AU - Tatusova, T. AU - Ciufo, S. AU - Fedorov, B. AU - O’Neill, K. AU - Tolstoy, I. PY - 2014 DA - 2014// TI - RefSeq microbial genomes database: new representation and annotation strategy JO - Nucleic Acids Res VL - 42 UR - https://doi.org/10.1093/nar/gkt1274 DO - 10.1093/nar/gkt1274 ID - Tatusova2014 ER - TY - JOUR AU - Brister, J. R. AU - Ako-Adjei, D. AU - Bao, Y. AU - Blinkova, O. PY - 2015 DA - 2015// TI - NCBI viral genomes resource JO - Nucleic Acids Res VL - 43 UR - https://doi.org/10.1093/nar/gku1207 DO - 10.1093/nar/gku1207 ID - Brister2015 ER - TY - JOUR AU - Jaeger, K. -. E. AU - Eggert, T. PY - 2002 DA - 2002// TI - Lipases for biotechnology JO - Curr Opin Biotechnol VL - 13 UR - https://doi.org/10.1016/S0958-1669(02)00341-5 DO - 10.1016/S0958-1669(02)00341-5 ID - Jaeger2002 ER - TY - JOUR AU - Li, W. AU - Godzik, A. PY - 2006 DA - 2006// TI - Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences JO - Bioinformatics VL - 22 UR - https://doi.org/10.1093/bioinformatics/btl158 DO - 10.1093/bioinformatics/btl158 ID - Li2006 ER - TY - JOUR AU - Anton, B. P. AU - Chang, Y. -. C. AU - Brown, P. AU - Choi, H. -. P. AU - Faller, L. L. AU - Guleria, J. PY - 2013 DA - 2013// TI - The COMBREX project: design, methodology, and initial results JO - PLoS Biol VL - 11 UR - https://doi.org/10.1371/journal.pbio.1001638 DO - 10.1371/journal.pbio.1001638 ID - Anton2013 ER - TY - JOUR AU - Daiha, K. AU - De, G. AU - Angeli, R. AU - De Oliveira, S. D. AU - Almeida, R. V. PY - 2015 DA - 2015// TI - Are Lipases Still Important Biocatalysts? A Study of Scientific Publications and Patents for Technological Forecasting JO - PLoS One VL - 10 UR - https://doi.org/10.1371/journal.pone.0131624 DO - 10.1371/journal.pone.0131624 ID - Daiha2015 ER - TY - JOUR AU - Grote, A. AU - Hiller, K. AU - Scheer, M. AU - Münch, R. AU - Nörtemann, B. AU - Hempel, D. C. PY - 2005 DA - 2005// TI - JCat: a novel tool to adapt codon usage of a target gene to its potential expression host JO - Nucleic Acids Res VL - 33 UR - https://doi.org/10.1093/nar/gki376 DO - 10.1093/nar/gki376 ID - Grote2005 ER - TY - BOOK AU - Sambrook, J. AU - Russell, D. W. PY - 2001 DA - 2001// TI - Molecular Cloning PB - Cold Spring Habor CY - New York ID - Sambrook2001 ER - TY - JOUR AU - Bertani, G. PY - 1951 DA - 1951// TI - Studies on lysogenesis. I. The mode of phage liberation by lysogenic Escherichia coli JO - J Bacteriol VL - 62 ID - Bertani1951 ER - TY - JOUR AU - Kouker, G. AU - Jaeger, K. E. PY - 1987 DA - 1987// TI - Specific and sensitive plate assay for bacterial lipases JO - Appl Environ Microbiol VL - 53 ID - Kouker1987 ER - TY - JOUR AU - Masuch, T. AU - Kusnezowa, A. AU - Nilewski, S. AU - Bautista, J. T. AU - Kourist, R. AU - Leichert, L. I. PY - 2015 DA - 2015// TI - A combined bioinformatics and functional metagenomics approach to discovering lipolytic biocatalysts JO - Front Microbiol VL - 6 UR - https://doi.org/10.3389/fmicb.2015.01110 DO - 10.3389/fmicb.2015.01110 ID - Masuch2015 ER - TY - JOUR PY - 2015 DA - 2015// TI - UniProt: a hub for protein information JO - Nucleic Acids Res VL - 43 UR - https://doi.org/10.1093/nar/gku989 DO - 10.1093/nar/gku989 ID - ref27 ER -