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Fig. 2 | BMC Bioinformatics

Fig. 2

From: HLAscan: genotyping of the HLA region using next-generation sequencing data

Fig. 2

An example of mistyping DQB1*02:02:01:01 as DQB1*02:01:01:01. Sequence view showing actual alignment of sequence reads at exon 3 of DQB1*02:02:01:01 a and DQB1*02:02:01:01 (b). Consecutive dots under base calls represent sequence reads, and spaces without dots indicate that no sequence reads are aligned to the corresponding sequences. Pink spaces at position 161 show the status of sequence alignment over the SNP position that differs between DQB1*02:02:01:01 and DQB1*02:01:01:01. Actual mapping view of the sequence reads from NA11830 sample was generated in SAMtools tview

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