Table 3 Differences in typing results of HapMap data. Known HLA typing results were reported elsewhere [12]
From: HLAscan: genotyping of the HLA region using next-generation sequencing data
Genes | Known HLA type | Predictions of HLAscan | # of the case | ||
|---|---|---|---|---|---|
Allele1 | Allele2 | Allele1 (correct) | Allele2 (mistyped) | ||
DQB1 | xx:yy* | 02:01 | xx:yy* | 02:02 | 6 |
pp:qq* | 06:05 | pp:qq* | 06:09 | 2 | |
DRB1 | 15:01 | 15:01 | 15:01 | 16:01 | 3 |
11:04 | 14:01 | 11:04 | 14:10 | 1 | |