Table 4 Accuracy prediction of PCR-SBT, HLAreporter, and HLAscan using samples from five Korean subjects
From: HLAscan: genotyping of the HLA region using next-generation sequencing data
Samples | Method | HLA-A | HLA-B | HLA-DRB1 | |||
|---|---|---|---|---|---|---|---|
77072421 NS1512240004 | PCR-SBT | 02:06 | 02:10 | 40:02 | 55:02 | 04:05 | 11:01 |
HLAreporter | 02:10 | 02:10 | 40:02:01 | 55:02:01 | 04:05:01 | 11:01:01 | |
HLAscan | 02:06:01 | 02:10 | 40:02:01 | 55:02:01 | 04:05:01 | 11:01:01 | |
77072412 NS1512240008 | PCR-SBT | 24:02 | 31:01 | 35:01 | 51:02 | 09:01 | 09:01 |
HLAreporter | 24:82 | 31:01:02 | 35:42:02 | 51:02:02 | 09:01:02 | 09:01:02 | |
HLAscan | 24:02:01 | 31:01:13 | 35:01:01 | 51:02:01 | 09:01:02 | 09:01:02 | |
77072374 NS1512240012 | PCR-SBT | 02:01 | 33:03 | 15:01 | 44:03 | 09:01 | 13:02 |
HLAreporter | 02:01:01 | 33:03:01 | 15:01:01 | 44:03:11 | 09:01:02 | 13:02:01 | |
HLAscan | 02:01:01 | 33:03:23 | 15:01:01 | 44:03:01 | 09:01:02 | 13:02:01 | |
77072406 NS1512240016 | PCR-SBT | 11:01 | 26:01 | 44:02 | 46:01 | 09:01 | 13:01 |
HLAreporter | 11:01:01 | 26:01:01 | 44:02:01 | 46:01:01 | 09:01:02 | 13:01:01 | |
HLAscan | 11:01:01:01 | 26:01:01:01 | 44:02:01 | 46:01:01 | 09:01:02 | 13:01:01 | |
77072287 NS1512240020 | PCR-SBT | 02:01 | 02:06 | 13:01 | 40:02 | 08:02 | 12:02 |
HLAreporter | 02:01:01 | 02:01:01 | 13:01:01 | 40:02:01 | 08:02:01 | 12:02:01 | |
HLAscan | 02:01:01 | 02:06:01 | 13:01:01 | 40:02:01 | 08:02:01 | 12:02:01 | |