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Table 4 Accuracy prediction of PCR-SBT, HLAreporter, and HLAscan using samples from five Korean subjects

From: HLAscan: genotyping of the HLA region using next-generation sequencing data

Samples Method HLA-A HLA-B HLA-DRB1
77072421 NS1512240004 PCR-SBT 02:06 02:10 40:02 55:02 04:05 11:01
HLAreporter 02:10 02:10 40:02:01 55:02:01 04:05:01 11:01:01
HLAscan 02:06:01 02:10 40:02:01 55:02:01 04:05:01 11:01:01
77072412 NS1512240008 PCR-SBT 24:02 31:01 35:01 51:02 09:01 09:01
HLAreporter 24:82 31:01:02 35:42:02 51:02:02 09:01:02 09:01:02
HLAscan 24:02:01 31:01:13 35:01:01 51:02:01 09:01:02 09:01:02
77072374 NS1512240012 PCR-SBT 02:01 33:03 15:01 44:03 09:01 13:02
HLAreporter 02:01:01 33:03:01 15:01:01 44:03:11 09:01:02 13:02:01
HLAscan 02:01:01 33:03:23 15:01:01 44:03:01 09:01:02 13:02:01
77072406 NS1512240016 PCR-SBT 11:01 26:01 44:02 46:01 09:01 13:01
HLAreporter 11:01:01 26:01:01 44:02:01 46:01:01 09:01:02 13:01:01
HLAscan 11:01:01:01 26:01:01:01 44:02:01 46:01:01 09:01:02 13:01:01
77072287 NS1512240020 PCR-SBT 02:01 02:06 13:01 40:02 08:02 12:02
HLAreporter 02:01:01 02:01:01 13:01:01 40:02:01 08:02:01 12:02:01
HLAscan 02:01:01 02:06:01 13:01:01 40:02:01 08:02:01 12:02:01
  1. Typing results different from those obtained by SBT methods are marked in red