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Table 5 Accuracy of HLA typing using data from nine families. Results obtained at the four-digit level are summarized in this table. A total of 520 alleles were examined with 94% accuracy (489 correct), 2.3% (12 cases) missed, and 3.7% (19 cases) mistyped

From: HLAscan: genotyping of the HLA region using next-generation sequencing data

9 families

90× (10 individuals)

60× (17 individuals)

30× (25 individuals)

 

# alleles

correct

missing

wrong

# alleles

correct

missing

wrong

# alleles

correct

missing

wrong

HLA-A

20

20

0

0

34

32

0

2

50

47

2

1

HLA-B

20

20

0

0

34

33

0

1

50

45

1

4

HLA-C

20

20

0

0

34

33

0

1

50

49

1

0

HLA-DQB1

20

20

0

0

34

33

0

1

50

50

0

0

HLA-DRB1

20

20

0

0

34

33

0

1

50

49

1

0

All

100

100

0

0

170

164

0

6

250

240

5

5

Percentage

 

100

0

0

 

96.5

0

3.5

 

96

2

2