Fig. 6

Example from the web tool. Visualization of two sequence-graphs, both around Region 168 on chromosome 13 from GRCh38, created by the web tool. A simple graph with the alternative locus is shown at the top. On the bottom, a graph created by removing the flanking regions from the alternative locus before connecting it to the main path. Two genes (uc284nkk.1 on the main path and uc058yja.1 on the alternative locus) are shown. On the top sequence graph, these genes are on separate paths. By removing the flanking regions and using our notation for genomic intervals (bottom graph), we see that uc284nkk.1 and uc058yja.1 are very similar. Both end at the same position within a flanking region, and, barely visible from the figure, they have approximately 1000 base pairs each at the beginning that are different