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Fig. 2 | BMC Bioinformatics

Fig. 2

From: AGeNNT: annotation of enzyme families by means of refined neighborhood networks

Fig. 2

rGNN of IPR004651 (HisF). The biosynthesis of histidine requires reactions catalyzed by eight enzymes. HisF catalyzes the cyclization reaction needed for the sixth step. This rGNN was created by applying the S-Th threshold of 97, subspecies were eliminated, and ±10 neighbors at a co-occurrence value of 20% were collected. All nodes with a SeqCount value ≤ 25 were deleted

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