Table 3 Average runtimes of Arlequin and Hapl-o-Mat for estimation of haplotype frequencies from real population data
Sample size | Runtime Arlequin [s] | Runtime Hapl-o-Mat [s] | Ratio |
|---|---|---|---|
5000 | \( 242\pm 4 \) | \( 10\pm 2 \) | \( 24\pm 5 \) |
20000 | \( 6617\pm 971 \) | \( 39\pm 4 \) | \( 170\pm 30 \) |
50000 | \( 40539\pm 2,383 \) | \( 83\pm 10 \) | \( 488\pm 65 \) |