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Table 2 AUC, Youden index (J), Sensitivity (Se) and Specificity (Sp) from intra-platform comparison (training set: ribosomal genes, test set: non-ribosomal genes)

From: A systematic evaluation of nucleotide properties for CRISPR sgRNA design

Feature class

AUC

J

Se

Sp

PD Mono

0.785

0.443

0.717

0.726

PD Dinuc

0.792

0.478

0.765

0.713

Freq

0.700

0.332

0.779

0.553

Align

0.594

0.159

0.881

0.278

Thermo

0.616

0.222

0.639

0.580

Packer

0.637

0.207

0.431

0.776

PhyChem

0.659

0.241

0.633

0.608

PseKNC

0.647

0.243

0.694

0.549

Comb Feature

0.806

0.492

0.851

0.641

  1. Comb Feature: PD Mono+PD Dinuc +Thermo+Packer+PhyChem