Skip to main content

Table 5 Correlation between deep learning derived substitution matrices and benchmarking matrices

From: 3D deep convolutional neural networks for amino acid environment similarity analysis

Matrix 1 Matrix 2 R-value
3DCNN- S freq BLOSUM62 0.702
3DCNN- S freq PAM250 0.609
3DCNN- S freq WAC 0.613
3DCNN- S dot BLOSUM62 0.82
3DCNN- S dot PAM250 0.788
3DCNN- S dot WAC 0.6183
WAC BLOSUM62 0.811
WAC PAM250 0.681
PAM250 BLOSUM62 0.872
  1. We show pairwise comparison of multiple matrices, and report the R-value of the correlation