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Table 2 Comparison to existing tools

From: Recognizing RNA structural motifs in HT-SELEX data for ribosomal protein S15

Software Run Time
MEME N/A
DREME ≈3 hrs
GLAM2 ≈1 week
AptaTrace ≈5 hrs
AptaTrace (33% sampling) ≈21 hrs
AptaTrace (full data) ≈70 hrs
RNAcontext/RCK ≈1 week
NCM ≈10 hrs
  1. Unless noted otherwise, all software were run using a sample size of 4105 sequences