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Table 2 Comparison to existing tools

From: Recognizing RNA structural motifs in HT-SELEX data for ribosomal protein S15

Software

Run Time

MEME

N/A

DREME

≈3 hrs

GLAM2

≈1 week

AptaTrace

≈5 hrs

AptaTrace (33% sampling)

≈21 hrs

AptaTrace (full data)

≈70 hrs

RNAcontext/RCK

≈1 week

NCM

≈10 hrs

  1. Unless noted otherwise, all software were run using a sample size of 4∗105 sequences
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BMC Bioinformatics

ISSN: 1471-2105

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