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Table 6 Summary of experimentally tested sequences and their binding affinity

From: Recognizing RNA structural motifs in HT-SELEX data for ribosomal protein S15

 

Seq. Id

Cluster Id

K d (nM)

Reason

A

98

52739

85

High freq.; High mean pairwise identity (> 90%)

B

101

6062

42

Most freq.; High mean pairwise identity (> 90%)

C

575

2903

62

High freq.; High mean pairwise identity (> 90%)

D

669

1792

25

High freq.; High mean pairwise identity (> 90%)

E

4778

851

19

High freq.; High mean pairwise identity (> 90%)

F

27773

517

2.8

High freq.; High mean pairwise identity (> 90%)

G

46474

63331

99

Singleton; Small cluster (≤100 seqs.)

H

355069

1307

123

Singleton; Small cluster (≤100 seqs.)

I

244064

4454

62

Singleton; Medium cluster (100<seqs.<1000)

J

158254

91212

31

Singleton; Singleton cluster (= 1 seq.)

K

279047

70316

77

Singleton; Singleton cluster (= 1 seq.)

L

4077

68

9.8

Singleton; Large cluster (≥1000 seqs.); Low mean pairwise identity cluster (< 90%)

M

170365

2293

Non-specific

Singleton; Low mean pairwise identity cluster (< 90%)

N

192209

3606

Non-specific

Singleton; Low mean pairwise identity cluster (< 90%)

O

4650

3969

38

Depleted; Medium cluster (100<seqs.<1000); low pairwise identity cluster (< 90%)

P

315173

5799

28

Depleted; Previously identified regulator [46]