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Table 6 Summary of experimentally tested sequences and their binding affinity

From: Recognizing RNA structural motifs in HT-SELEX data for ribosomal protein S15

  Seq. Id Cluster Id K d (nM) Reason
A 98 52739 85 High freq.; High mean pairwise identity (> 90%)
B 101 6062 42 Most freq.; High mean pairwise identity (> 90%)
C 575 2903 62 High freq.; High mean pairwise identity (> 90%)
D 669 1792 25 High freq.; High mean pairwise identity (> 90%)
E 4778 851 19 High freq.; High mean pairwise identity (> 90%)
F 27773 517 2.8 High freq.; High mean pairwise identity (> 90%)
G 46474 63331 99 Singleton; Small cluster (≤100 seqs.)
H 355069 1307 123 Singleton; Small cluster (≤100 seqs.)
I 244064 4454 62 Singleton; Medium cluster (100<seqs.<1000)
J 158254 91212 31 Singleton; Singleton cluster (= 1 seq.)
K 279047 70316 77 Singleton; Singleton cluster (= 1 seq.)
L 4077 68 9.8 Singleton; Large cluster (≥1000 seqs.); Low mean pairwise identity cluster (< 90%)
M 170365 2293 Non-specific Singleton; Low mean pairwise identity cluster (< 90%)
N 192209 3606 Non-specific Singleton; Low mean pairwise identity cluster (< 90%)
O 4650 3969 38 Depleted; Medium cluster (100<seqs.<1000); low pairwise identity cluster (< 90%)
P 315173 5799 28 Depleted; Previously identified regulator [46]