Table 2 Computing TP, FP, TN and FN for Gene-Based comparison of the performance of the tools
From: An evaluation of copy number variation detection tools for cancer using whole exome sequencing data
Amplification | CNVbench > thr | CNVbench < thr |
CNVtest > thr | TP | FP |
CNVtest < thr | FN | TN |
Deletion | CNVbench < (− thr) | CNVbench > (−thr) |
CNVtest < (−thr) | TP | FP |
CNVtest > (−thr) | FN | TN |