From: Intervene: a tool for intersection and visualization of multiple gene or genomic region sets
Application | Venn plot types | Upset plot | Pairwise heat map | Weighted venn | Application type | Input type | No. Of inputs | Output type |
---|---|---|---|---|---|---|---|---|
VennDiagramWeb [12] | Classical Venn, Euler | ✘ | ✘ | ✘ | web app | Lists | 5 | TIFF, SVG, PNG, R objects |
VennPainter [14] | Classical Venn, Edwards, Nested Venn | ✘ | ✘ | ✘ | Stand-alone | Lists | 8 | SVG, text |
Vennture [15] | Edwards | ✘ | ✘ | ✘ | Stand-alone | Lists | 6 | PowerPoint, Excel |
BioVenn [11] | Classical Venn | ✘ | ✘ | ✓ | web app | Lists | 3 | SVG, PNG |
jVenn [13] | Classical Venn, Edwards | ✘ | ✘ | ✘ | web app | Lists | 6 | PNG and SVG |
InteractiVenn [16] | Edwards | ✘ | ✘ | ✘ | web app | Lists | 6 | SVG, PNG, text |
✘ | ✓ | ✘ | ✘ | web app, R package | Lists, binary, counts | Multiple | PDF, PNG | |
ChippeakAnno [5] | Classical Venn | ✘ | ✘ | ✘ | R package | Genomic regions | 5 | PDF, SVG, PNG |
pybedtools [6] | Classical Venn | ✘ | Matrix only | ✓ | command line | Genomic regions | 3 for Venn, multiple for pairwise | PDF, SVG, PNG |
Intervene | Classical Venn, Euler, Edwards, Chow-Ruskey, Square, Battle | ✓ | ✓ | ✓ | command line, web app | Genomic regions, lists, binary, counts | 6 for Venn, multiple for upset and pairwise | PDF, SVG, PNG, TIFF, R objects, text |