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Table 1 Run times for the different alignment methods for aligning the R200 reads to DH10B and MG1655

From: Variable-order sequence modeling improves bacterial strain discrimination for Ion Torrent DNA reads

Aligner

Run time (minutes)

Bowtie2

1.10

Last

1.85

TMAP

2.10

Segemehl

48.24

VarHMM

210.45