GRAPE: a pathway template method to characterize tissue-specific functionality from gene expression profiles

BMC Bioinformatics

Table 1 Gene Expression datasets used in healthy tissue classification

GEO accession	Platform	Tissue	# Samples	Figs. ^a
GSE47881	Affymetrix (GPL570)	Muscle	45	2, S4
GSE9419	Affymetrix	Muscle	22	2
GSE4302	Affymetrix	Lung	44	2, S4
GSE5058	Affymetrix	Lung	24	2
GSE4183 ^b	Affymetrix	Colon	23	2, S4
GSE9254	Affymetrix	Colon	19	2
GSE42507	Agilent (GPL6480)	Muscle	44	S3, S4
GSE23697	Agilent	Muscle	35	S3
GSE40588	Agilent	Lung	60	S3, S4
GSE15197	Agilent	Lung	39	S3
GSE41667 ^c	Agilent	Colon	33	S4

^aIndicates which classification analyses each dataset was part of. The classification analyses are indexed by figures, with Fig. 2 referring to the Affymetrix only multi-dataset analysis, Additional file 1: Figure S3 referring to the Agilent only multi-dataset analysis and Additional file 1: Figure S4 referring to the mixed-platform analysis
^b8 healthy, 15 IBD
^c12 healthy, 21 low grade dysplasia

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