Skip to main content

Table 3 The performance of different kinds of feature descriptors in non-redundant dataset by SVM method

From: Analysis and prediction of single-stranded and double-stranded DNA binding proteins based on protein sequences

Features

ACC

SN

SP

AUC

MCC

F1

OAAC

0.802

0.801

0.811

0.858

0.505

0.870

Dipeptide = 0

0.797

0.798

0.795

0.870

0.490

0.867

Dipeptide = 1

0.810

0.814

0.791

0.884

0.506

0.877

Dipeptide = 2

0.792

0.801

0.750

0.859

0.459

0.865

AAindex

0.792

0.795

0.779

0.857

0.473

0.864

PSSM

0.795

0.797

0.790

0.863

0.484

0.866

All features

0.860

0.863

0.845

0.923

0.615

0.911

Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us