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Fig. 1 | BMC Bioinformatics

Fig. 1

From: SBMLmod: a Python-based web application and web service for efficient data integration and model simulation

Fig. 1

SBMLmod: basic workflow and input data outline. a Welcome screen of the web application. SBMLmod is organised into two panels. Input files are chosen in panel a. Mapping files are optional. Model modification and/or steady state analysis may be chosen in panel B. b Simplified workflow scheme of web application. An SBML model might be calibrated based on available data. Optionally, IDs might be mapped, if SBML model and data differ in the used identifier standard. Steady state concentration of metabolites and reaction flux analysis is feasible with COPASIWS [8]. c Basic outline of data file format. The first column comprises data specific IDs (e. g. gene identifier). The first row contains identifiers of the data in the respective column

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BMC Bioinformatics

ISSN: 1471-2105

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