Table 5 Mean execution times, speedups and parallel efficiency (Experiment 2 - Buz.fasta - 805 MB) - SparkBLAST vs CloudBLAST - Microsoft Azure
From: SparkBLAST: scalable BLAST processing using in-memory operations
# cores | 4 | 12 | 28 | 60 | 124 | 252 |
|---|---|---|---|---|---|---|
SparkBLAST | 143,228.95 | 47,031.62 | 24,850.51 | 11,692.45 | 6,041.64 | 3,138.64 |
Speedup | 3.83 | 11.67 | 22.09 | 46.95 | 90.86 | 174.89 |
Efficiency | 0.96 | 0.97 | 0.79 | 0.78 | 0.73 | 0.69 |
CloudBLAST | 148,512.95 | 47,950.05 | 26,858.71 | 11,951.11 | 6,993.52 | 3,879.06 |
Speedup | 3.7 | 11.45 | 20.44 | 45.93 | 78.49 | 141.51 |
Efficiency | 0.92 | 0.95 | 0.73 | 0.77 | 0.63 | 0.56 |