An improved filtering algorithm for big read datasets and its application to single-cell assembly

BMC Bioinformatics

Table 2 Selected species and datasets (Cases)

Short name	Species/Description	Source	URL
ASZN2	Candidatus Poribacteria sp. WGA-4E_FD	Hentschel Group [27]	[28]
Aceto	Acetothermia bacterium JGI MDM2 LHC4sed-1-H19	JGI Genome Portal	[29]
Alphaproteo	Alphaproteobacteria bacterium SCGC AC-312_D23v2	JGI Genome Portal	[30]
Arco	Arcobacter sp. SCGC AAA036-D18	JGI Genome Portal	[31]
Arma	Armatimonadetes bacterium JGI 0000077-K19	JGI Genome Portal	[32]
Bacteroides	Bacteroidetes bacVI JGI MCM14ME016	JGI Genome Portal	[33]
Caldi	Calescamantes bacterium JGI MDM2 SSWTFF-3-M19	JGI Genome Portal	[34]
Caulo	Caulobacter bacterium JGI SC39-H11	JGI Genome Portal	[35]
Chloroflexi	Chloroflexi bacterium SCGC AAA257-O03	JGI Genome Portal	[36]
Crenarch	Crenarchaeota archaeon SCGC AAA261-F05	JGI Genome Portal	[37]
Cyanobact	Cyanobacteria bacterium SCGC JGI 014-E08	JGI Genome Portal	[38]
E.coli	E.coli K-12, strain MG1655, single cell MDA, Cell one	UC San Diego	[39]
SAR324	SAR324 (Deltaproteobacteria)	UC San Diego	[39]

ISSN: 1471-2105