Table 7 Running time of different MSA tools with different number of sequences and average length
From: CMSA: a heterogeneous CPU/GPU computing system for multiple similar RNA/DNA sequence alignment
Dataset | Number | Kalign | MAFFT | HAlign(one node) | CMSA(CPU) | CMSA(CPU/GPU) |
|---|---|---|---|---|---|---|
D1 | 10000 | 20m39s | 2m26s | 39.99s | 6.66s | 7.71s |
100000 | - | 18h30m | 5m59s | 41.61s | 44.32s | |
500000 | - | - | 33m17s | 3m15s | 3m20s | |
D2 | 10000 | 52m28s | 4m40s | 1m36s | 16.21s | 17.19s |
100000 | - | - | 22m11s | 2m14s | 2m36s | |
500000 | - | - | 2h15m | 11m6s | 12m1s | |
D3 | 10000 | 79m23s | 8m59s | 10m9s | 45.01s | 44.11s |
100000 | - | - | 15m27s | 6m16s | 6m21s | |
500000 | - | - | 11h2m | 30m28s | 27m58s |