Table 1 The statistics of SVASE identification using PVAAS and ISVASE
From: ISVASE: identification of sequence variant associated with splicing event using RNA-seq data
Data | PVAAS | ISVASE(novel) | ISVASE(all) | ||||||
|---|---|---|---|---|---|---|---|---|---|
Total | dbSNP | RADAR | Total | dbSNP | RADAR | Total | dbSNP | RADAR | |
PVAAS test data | 8 | 0 | 0 | 14 | 7 | 0 | 172 | 129 | 0 |
Control1(SRR388226) | 61 | 12 | 0 | 134 | 54 | 1 | 2577 | 2138 | 3 |
Control2(SRR388227) | 63 | 9 | 0 | 120 | 50 | 2 | 2557 | 2130 | 3 |
Control(common) | 28 | 2 | 0 | 87 | 36 | 1 | 2105 | 1788 | 2 |
Knockdown1(SRR388228) | 93 | 18 | 0 | 187 | 83 | 1 | 2710 | 2250 | 2 |
Knockdown2(SRR388229) | 89 | 24 | 0 | 168 | 73 | 1 | 2760 | 2293 | 1 |
Knockdown(common) | 31 | 8 | 0 | 119 | 55 | 1 | 2298 | 1951 | 1 |