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Table 5 Imputation accuracy for HIBAG. Unlike SNP2HLA, we did not use T1DGC as a reference panel but a precomputed model due to the way HIBAG works. Nevertheless, our results are very similar to those obtained with SNP2HLA

From: HLA-check: evaluating HLA data from SNP information

HLA (two-field)

Test population

Base imputation

People removed

Sub-population imputation

HLA-A

865

97

36

99.5

HLA-B

1495

95

84

97.3

HLA-C

813

95

83

99.7