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Table 4 List of events from the glioblastoma data set that were chosen by our variable selection methods (x = event was selected)

From: Variable selection for disease progression models: methods for oncogenetic trees and application to cancer and HIV

Method

freq

brod

cor

fisher

weight

OT

lcliq

mcliq

threshold

0.41

0.1725

0.70

10−26

0.0018

0.90

0.2

0.15

Chr7p+

x

x

x

x

 

x

x

x

Chr7q+

x

x

x

x

 

x

x

x

Chr19p+

x

x

x

x

  

x

x

Chr20p+

 

x

x

x

 

x

x

x

Chr20q+

 

x

x

x

 

x

x

x

Chr10p-

x

x

 

x

  

x

x

Chr10q-

x

x

 

x

  

x

x

Chr7p++

x

x

 

x

  

x

x

Chr9p-

x

x

    

x

x

Chr19q+

 

x

x

x

  

x

 

Chr9q++

  

x

 

x

x

  

Chr12p++

  

x

 

x

x

  

Chr18p++

  

x

 

x

x

  

Chr18q++

  

x

 

x

x

  

Chr21q++

  

x

 

x

x

  

Chr22q-

x

x

     

x

Chr1p-

 

x

     

x

Chr2q++

  

x

 

x

   

Chr3p++

    

x

x

  

Chr8q++

    

x

x

  

Chr11p-

 

x

 

x

    

Chr11q-

 

x

 

x

    

Chr13q-

x

x

      

Chr14q-

x

x

      

Chr15q-

x

x

      

Chr1q+

 

x

      

Chr1q-

 

x

      

Chr3q-

 

x

      

Chr4q-

 

x

      

Chr6p-

 

x

      

Chr6q-

 

x

      

Chr8p-

 

x

      

Chr9q-

 

x

      

Chr12q+

 

x

      

Chr12q-

 

x

      

Chr15q+

 

x

      

Chr21p-

 

x

      

Chr7q-

    

x

   

Chr13q+

    

x

   

Chr18p+

    

x

   
  1. The events are sorted according to their selection frequency. Events already mentioned in the literature are printed in bold