NoGOA: predicting noisy GO annotations using evidences and sparse representation

BMC Bioinformatics

Table 4 Performance of predicting noisy annotations in GOA files of H. sapiens (archived date: May, 2016)

		Random	LF	NtN	NoisyGOA	SR	EC	NtN+EC	NoisyGOA+EC	NoGOA
BP	Precision	23.99±0.49	29.50±0.57	23.71±0.47	33.98±0.67	35.24±0.56	29.43±0.56	26.30±0.51	38.55±0.72	4 1 . 1 4±0.76
	Recall	5 7 . 7 5±1.00	29.58±0.57	55.84±0.87	41.08±0.76	35.67±1.48	49.04±0.86	52.52±0.89	44.82±0.81	41.45±0.76
	F1-Score	31.51±0.60	29.54±0.57	30.94±0.55	36.63±0.70	35.44±0.69	35.04±0.64	33.24±0.61	4 0 . 9 3±0.75	4 1 . 2 8±0.76
CC	Precision	19.34±0.52	28.62±0.77	17.75±0.52	36.41±0.89	4 1 . 4 1±1.01	17.40±0.45	18.00±0.48	36.13±0.88	4 1 . 3 4±0.97
	Recall	50.62±1.12	28.69±0.77	49.68±1.18	44.45±1.02	41.91±1.02	7 9 . 2 2±1.40	44.80±1.07	44.15±1.02	41.85±0.98
	F1-Score	25.98±0.65	28.65±0.77	24.22±0.65	38.79±0.93	4 1 . 6 3±1.02	25.34±0.58	24.34±0.61	38.50±0.92	4 1 . 5 6±0.97
MF	Precision	27.74±0.39	23.60±0.38	36.43±0.45	38.16±0.48	46.18±0.54	41.25±0.50	49.90±0.55	52.18±0.57	5 8 . 9 2±0.60
	Recall	41.94±0.50	23.63±0.38	48.83±0.57	46.41±0.55	46.57±0.54	6 0 . 4 6±0.64	56.80±0.60	58.26±0.62	59.47±0.60
	F1-Score	30.35±0.41	23.61±0.38	38.82±0.47	39.44±0.48	46.34±0.54	44.45±0.51	51.75±0.56	53.23±0.58	5 9 . 1 4±0.60

ISSN: 1471-2105