Table 1 Features used in the prediction
Features | Description |
|---|---|
PWM score | The score DNA sequence against position weight matrix |
Conservation score | PhastCons conservation score for multiple alignments of 99 vertebrate genomes to the human genome |
Distance to TSS | Distance to transcription start site |
Reads at site | Average reads at the binding site |
Cut counts at site | Average cut counts at the binding site |
Upstream reads | Average reads upstream of the binding site |
Downstream reads | Average reads downstream of the binding site |
Upstream cut counts | Average cut counts upstream of the binding site |
Downstream cut counts | Average cut counts downstream of the binding Site |
Reads footprint score | Average footprint score based on reads profile |
Cut counts footprint score | Average footprint score based on cut profile |