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Table 3 List of publicly available T. castaneum small RNA datasets representing different developmental stages

From: Evaluation of high-throughput isomiR identification tools: illuminating the early isomiRome of Tribolium castaneum

ID

Sample

Transcription

GSM1556886

Oocyte small RNA replicate 1

Maternal

GSM1556887

Oocyte small RNA replicate 2

Maternal

GSM1556888

Embryo small RNA 0–5 h replicate 1

Maternal

GSM1556889

Embryo small RNA 0–5 h replicate 2

Maternal

GSM1556890

Embryo small RNA 8–16 h

Zygotic

GSM1556891

Embryo small RNA 16–20 h

Zygotic

GSM1556892

Embryo small RNA 20–24 h

Zygotic

GSM1556893

Embryo small RNA 24–34 h

Zygotic

GSM1556894

Embryo small RNA 34–48 h

Zygotic

GSM1556895

Embryo small RNA 48–144 h

Zygotic

  1. After ~5 h, the maternal transcription phase ends and zygotic transcription commences [15]