ARVs | Topology | Number of unique sequence IDs/expanded sequences | Number of allowed combinations | Rare variant filtering | Number of outliers removed | |
---|---|---|---|---|---|---|
PIs | ATV | 10x8x6 | 995 / 13,625 | < 1000 | ✓ | 1 |
DRV | 8 × 8 | 590 / 10,374 | < 1000 | ✓ | 2 | |
FPV | 8x8x8 | 1429 / 17,501 | < 1000 | x | none | |
IDV | 8x6x10 | 1459 / 16,977 | < 1000 | ✓ | 1 | |
LPV | 10x8x10 | 1284 / 11,019 | < 300 | x | none | |
NFV | 10x10x10 | 1524 / 11,929 | < 300 | x | none | |
SQV | 10x10x8 | 1484 / 11,509 | < 300 | x | none | |
TPV | 10x6x8 | 698 / 11,989 | < 1000 | ✓ | 2 | |
NRTIs | 3TC | 10x10x6 | 1342 / 33,181 | < 1000 | ✓ | none |
ABC | 14 | 1401 / 34,016 | < 1000 | x | none | |
AZT | 19 | 1358 / 33,818 | < 1000 | ✓ | none | |
D4T | 10x4x4 | 1365 / 34,056 | < 1000 | ✓ | none | |
DDI | 10x6x6 | 1368 / 34,062 | < 1000 | ✓ | none | |
TDF | 10 × 2 | 1130 / 29,637 | < 1000 | x | none | |
NNRTIs | EFV | 10x6x10 | 1400 / 33,906 | < 1000 | ✓ | none |
ETR | 8x2x10 | 448 / 11,397 | < 1000 | x | 2 | |
NVP | 10x10x4 | 1414 / 20,348 | < 300 | x | none | |
RPV | 16 | 169 / 2977 | < 1000 | ✓ | none |