From: Evaluation of the impact of Illumina error correction tools on de novo genome assembly
Abbr. | Organism | Reference ID | Genome size | Cov. | Sequencing platform | Read length | Trimmed reads | Dataset ID | Ref. |
---|---|---|---|---|---|---|---|---|---|
D1 | Bifidobacterium dentium | Nc013714.1 | 2.6 Mbp | 373 X | Illumina MiSeq | 251 bp | Â | SRR1151311 | [23] |
D2 | Escherichia coli K-12 DH10B | NC010473 | 4.5 Mbp | 418 X | Illumina MiSeq | 150 bp | Â | Ill. Data library | [10] |
D3 | Escherichia coli K-12 MG1655 | NC000913 | 4.5 Mbp | 612 X | Illumina GAII | 100 bp | Â | ERA000206 | [10] |
D4 | Salmonella enterica | NC011083.1 | 4.7 Mbp | 97 X | Illumina MiSeq | 239 bp | \(\checkmark \) | SRR1206093 | [23] |
D5 | Pseudomonas aeruginosa | ERR330008 | 6.1 Mbp | 169 X | Illumina MiSeq | 120 bp | \(\checkmark \) | ERR330008 | [10] |
D6 | Homo sapiens Chr. 21 | HG19 | 45.2 Mbp | 29 X | Illumina HiSeq | 100 bp | Â | Ill. Data library | [10] |
D7 | Caenorhabditis elegans | WS222 | 97.6 Mbp | 58 X | Illumina HiSeq | 101 bp | Â | SRR543736 | [23] |
D8 | Drosophila melanogaster | Release 5 | 116.4 Mbp | 52 X | Illumina HiSeq | 100 bp | Â | SRR823377 | [23] |