Skip to main content

Table 2 Real datasets used for the evaluation of EC tools

From: Evaluation of the impact of Illumina error correction tools on de novo genome assembly

Abbr. Organism Reference ID Genome size Cov. Sequencing platform Read length Trimmed reads Dataset ID Ref.
D1 Bifidobacterium dentium Nc013714.1 2.6 Mbp 373 X Illumina MiSeq 251 bp   SRR1151311 [23]
D2 Escherichia coli K-12 DH10B NC010473 4.5 Mbp 418 X Illumina MiSeq 150 bp   Ill. Data library [10]
D3 Escherichia coli K-12 MG1655 NC000913 4.5 Mbp 612 X Illumina GAII 100 bp   ERA000206 [10]
D4 Salmonella enterica NC011083.1 4.7 Mbp 97 X Illumina MiSeq 239 bp \(\checkmark \) SRR1206093 [23]
D5 Pseudomonas aeruginosa ERR330008 6.1 Mbp 169 X Illumina MiSeq 120 bp \(\checkmark \) ERR330008 [10]
D6 Homo sapiens Chr. 21 HG19 45.2 Mbp 29 X Illumina HiSeq 100 bp   Ill. Data library [10]
D7 Caenorhabditis elegans WS222 97.6 Mbp 58 X Illumina HiSeq 101 bp   SRR543736 [23]
D8 Drosophila melanogaster Release 5 116.4 Mbp 52 X Illumina HiSeq 100 bp   SRR823377 [23]