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Table 4 NGA50 of respectively contigs (top) and scaffolds (bottom) assembled by SPAdes before and after error correction

From: Evaluation of the impact of Illumina error correction tools on de novo genome assembly

Tools D1 D2 D3 D4 D5 D6 D7 D8
Contig NGA50
 Uncorrected 397 392 92 570 119 253 231 409 264 881 8 559 6 429 50 484
 ACE 397 392 = 92 570 = 125 608 231 409 = 264 881 = 8 771 3 143 \(\downdownarrows \) 28 679 \(\downdownarrows \)
 BayesHammer 397 392 = 92 344 132 564 \(\upuparrows \) 231 409 = 264 881 = 9 075 6 540 53 534
 BFC 397 392 = 92 570 = 132 876 \(\upuparrows \) 231 409 = 264 881 = 9 375 6 389 49 185
 BLESS 2 397 392 = 92 570 = 119 265 231 409 = 264 881 = 7 975 3 047 \(\downdownarrows \) 23 814 \(\downdownarrows \)
 Blue 397 392 = 92 708 132 876 \(\upuparrows \) 231 409 = 289 353 7 628 \(\downdownarrows \) 6 191 50 486
 Fiona 397 392 = 92 611 119 253 = 231 409 = 264 881 = 9 224 5 346 \(\downdownarrows \) 45 472
 Karect 397 392 = 92 611 132 876 \(\upuparrows \) 231 409 = 264 881 = 9 865 \(\upuparrows \) 6 392 54 132
 Lighter 397 392 = 92 570 = 132 564 \(\upuparrows \) 231 409 = 289 353 9 609 \(\upuparrows \) 6 423 50 440
 Musket 397 392 = 92 566 132 876 \(\upuparrows \) 231 409 = 264 881 = 9 293 6 170 46 377
 RACER 397 392 = 92 523 112 393 231 409 = 264 881 = 7 336 \(\downdownarrows \) 3 244 \(\downdownarrows \) 21 538 \(\downdownarrows \)
 SGA-EC 397 392 = 92 344 119 255 231 409 = 264 881 = 9 296 6 435 52 105
 Trowel 397 392 = 92 344 119 335 231 409 = 264 881 = 7 808 6 389 48 357
Scaffold NGA50
 Uncorrected 397 392 97 353 132 876 231 409 289 353 8 829 6 472 60 554
 ACE 397 392 = 97 353 = 133 713 231 409 = 264 881 9 190 3 158 \(\downdownarrows \) 35 392 \(\downdownarrows \)
 BayesHammer 397 392 = 97 353 = 133 309 231 409 = 264 881 9 443 6 576 58 570
 BFC 397 392 = 97 353 = 133 088 231 409 = 264 881 9 664 6 419 59 613
 BLESS 2 397 392 = 97 353 = 132 876 = 231 409 = 264 881 8 441 3 073 \(\downdownarrows \) 35 638 \(\downdownarrows \)
 Blue 397 392 = 97 288 133 309 231 409 = 289 353 = 7 841 \(\downdownarrows \) 6 183 61 289
 Fiona 397 392 = 97 353 = 132 876 = 231 409 = 264 881 9 491 5 385 \(\downdownarrows \) 54 188 \(\downdownarrows \)
 Karect 397 392 = 97 353 = 133 058 231 409 = 264 881 10 302 \(\upuparrows \) 6 446 62 304
 Lighter 397 392 = 97 353 = 133 309 231 409 = 289 353 = 9 955 \(\upuparrows \) 6 468 59 697
 Musket 397 392 = 97 353 = 133 088 231 409 = 264 881 9 502 6 219 55 842
 RACER 397 392 = 97 353 = 132 876 = 231 409 = 264 881 7 603 \(\downdownarrows \) 3 266 \(\downdownarrows \) 23 783 \(\downdownarrows \)
 SGA-EC 397 392 = 97 353 = 132 876 = 231 409 = 264 881 9 640 6 483 60 636
 Trowel 397 392 = 97 353 = 132 876 = 231 409 = 264 881 8 107 6 435 57 078
  1. Arrows in the table are based on their value relative to the NGA50 value obtained from uncorrected data as follows: \(\downdownarrows \) < -10% < < 0% < < +10% < \(\upuparrows \)