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Fig. 3 | BMC Bioinformatics

Fig. 3

From: CellNetVis: a web tool for visualization of biological networks using force-directed layout constrained by cellular components

Fig. 3

CellNetVis interface showing a human high-throughput network distributed on a cell diagram. a Visualization of the first neighbors network queried from IIS platform using 2097 proteins from the HPA supportive IH and IF data as input. The nodes’ colors were set to be displayed according to the “Selected CC” attribute. The MAP2K2 node was selected to show its attributes, as an example, on the table on the right side of the diagram. b Some organelles were moved and the force-directed algorithm was stopped. c Edge bundling was computed and displayed. d Proteins annotated to the human MAPK signaling pathway from KEGG database were searched in the network using the Find button and are shown as highlighted nodes. e Only the previously highlighted nodes corresponding to proteins annotated to the human MAPK signaling pathway are visible

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BMC Bioinformatics

ISSN: 1471-2105

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