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Table 2 Characteristics of CellNetVis, Cerebral, CerebralWeb, and Mosaic

From: CellNetVis: a web tool for visualization of biological networks using force-directed layout constrained by cellular components

 

Cerebral

CerebralWeb

Mosaic

CellNetVis

Network layout updates while interacting

   

×

Plots the network over a full cell diagram

  

×

×

Web-based system

 

×

 

×

Clutter relief by edge-bundling

×

  

×

Movable cellular partitions

   

×

Highlight possible CCs of selected node

   

×

Supports large networks

×

×

 

×

Accepts pre-annotated cellular localization

×

×

 

×

Shareable visualization through URL

   

×

Downloads nodes’ unique CC from InnateDB

 

×

 

×

Shows quantity of nodes that are in each CC

   

×

Cytoscape independent

 

×

 

×

Online-database independent

×

×

 

×

Ready for use (non-programming dependent)

×

 

×

×

Open-source and freely available

×

×

×

×