Skip to main content

Table 5 The categorized U12-type and U2-type introns as queries and their stretch of the sequence included

From: Identification of genome-wide non-canonical spliced regions and analysis of biological functions for spliced sequences using Read-Split-Fly

Categorized names

Stretch of sequence included

u12db_3pFull_u12

40 bp of the 3′ acceptor site in the intron and 6 bp of the beginning of the right adjacent exon

u12db_3pFull_u2

40 bp of the 3′ acceptor site in the intron and 6 bp of the beginning of the right adjacent exon

u12db_5pFull_u12

15 bp of the 5′ donor site in the intron and 10 bp of the end of the left adjacent exon

u12db_5pFull_u2

15 bp of the 5′ donor site in the intron and 10 bp of the end of the left adjacent exon

u12db_branch_u12

from 10 bp to the left of the branch site to the 3′ donor site of the intron