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Table 4 List of CASP domains for which reconstruction could not recover the fold (a) using contacts only or (b) using contacts and secondary structures

From: Improved protein structure reconstruction using secondary structures, contacts at higher distance thresholds, and non-contacts

CASP

Domain

L

H

E

Without SS

With SS

TM-score

RMSD

GDT-TS

TM-score

RMSD

GDT-TS

9

T0629-D2

159

0

4

0.16

25.2

12.1

0.16

21.4

12.4

10

T0693-D1

100

76

4

0.38

14.7

34.5

0.44

12.0

41.8

10

T0741-D1

125

0

73

0.45

17.1

39.0

0.39

13.1

32.8

10

T0756-D2

86

45

0

0.25

12.0

25.9

0.38

15.4

39.5

  1. TM-score, RMSD, and GDT-TS of the best-of-20 models for each domain are presented. L, H, and E, refer to the length of the protein, number of helical residues, and number of strand residues, respectively
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BMC Bioinformatics

ISSN: 1471-2105

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