Improved protein structure reconstruction using secondary structures, contacts at higher distance thresholds, and non-contacts

Table 5 Reconstruction summary of the 1901 structural domains in SCOP dataset showing the reconstruction accuracy when only contacts are used and when non-contacts are added along with contacts

SCOPe Class	Class Description	Number of Domains	Using Contacts Only		Using Contacts and Non-Contacts
SCOPe Class	Class Description	Number of Domains	TM-score	RMSD	TM-score	RMSD
A	All alpha proteins	500	0.829	2.74	0.854	2.46
B	All beta proteins	349	0.851	2.43	0.873	2.19
C	Alpha and beta proteins (a/b)	232	0.923	1.84	0.932	1.68
D	Alpha and beta proteins (a + b)	538	0.856	2.46	0.878	2.22
E	Multi-domain proteins (alpha and beta)	49	0.853	3.47	0.878	3.14
F	Membrane and cell surface proteins	102	0.719	4.54	0.745	4.08
G	Small proteins	131	0.680	3.02	0.717	2.50
Total/Average		1901	0.816	2.928	0.840	2.610

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