MegaGTA | Xander | |||||
---|---|---|---|---|---|---|
k-mer size | 30 | 36 | 45 | 30 | 36 | 45 |
# of contigs | 16 | 7 | 4 | 14 | 7 | 4 |
# of gene recoverd | 9 | 5 | 4 | 8 | 4 | 4 |
duplication ratio | 1.82 | 1.46 | 1.00 | 1.75 | 1.82 | 1.00 |
# misassembled contigs | 1 | 0 | 0 | 1 | 0 | 0 |
# partially unaligned contigs | 2 | 0 | 0 | 2 | 0 | 0 |
# mismatches per 100kbp | 148 | 150 | 96 | 534 | 278 | 64 |
Wall time (second) | 101 | 73 | 65 | 1264 | 1090 | 573 |
The gene fraction of each recovered rplB genes (%) | ||||||
Acinetobacter baumannii | 84.8 | – | – | 84.8 | – | – |
Bacteroides vulgatus | 82.5 | 82.5 | – | 82.5 | 82.5 | – |
Deinococcus radiodurans | 99.6 | 99.6 | 81.5 | 99.6 | 99.6 | 81.5 |
Escherichia coli | 81.4 | – | – | 81.4 | – | – |
Propionibacterium acnes | 78.1 | – | – | 78.1 | – | – |
Rhodobacter sphaeroides | 98.2 | 64.3 | – | 98.2 | 64.3 | – |
Staphylococcus aureus | 99.6 | 99.6 | 99.6 | 99.6 | 99.6 | 99.6 |
Staphylococcus epidermidis | – | – | 99.6 | – | – | 99.6 |
Streptococcus mutans | 55.0 | 55.0 | 93.2 | – | – | 93.9 |
Streptococcus pneumoniae | 62.2 | – | – | 62.2 | – | – |