Fig. 7
From: A sensitive short read homology search tool for paired-end read sequencing data
The distance comparison between Short-Pair and HMMER on case 1 of the RNA-Seq dataset of Arabidopsis. 377 domains with the largest distance values starting from domain index 3201 to domain index 3577 are listed in the four subplots: a, b, c, and d. X-axis shows the indices of the domains. Smaller value indicates closer domain abundance to the ground truth. The average distances of HMMER, HMMER w/o filtration, HMMER GA cutoff, and Short-Pair are 704.92, 781.80, 1,054.77, and 522.12, respectively