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Table 2 The running time of HMMER under different cutoffs and Short-Pair on the Arabidopsis Thaliana RNA-Seq dataset

From: A sensitive short read homology search tool for paired-end read sequencing data

Case

HMMER,

HMMER,

HMMER,

Short-Pair

 

E-value 10

w/o filtration,

GA cutoff

 
  

E-value 10

  

Time (m)

0.66

191.53

0.51

2.48

  1. m: minutes. Note: The running time is the average running time of aligning 9,559,784 paired-end reads with a domain
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BMC Bioinformatics

ISSN: 1471-2105

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