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Table 3 The percentages of all three cases of paired-end read alignments by HMMER and Short-Pair for the synthetic metagenomic dataset

From: A sensitive short read homology search tool for paired-end read sequencing data

Case

HMMER,

HMMER,

HMMER,

Short-Pair

 

E-value 10

w/o filtration,

GA cutoff

 
  

E-value 10

  

Case 1

23.15%

21.63%

3.76%

0.26%

Case 2

65.82%

68.46%

2.46%

88.71%

Case 3

11.03%

9.91%

93.77%

11.03%

  1. Case 1: only one end aligned. Case 2: both ends aligned. Case 3: no end aligned
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BMC Bioinformatics

ISSN: 1471-2105

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