Table 3 Comparison of VAliBS, Bismark, BS-Seeker2, and BSMAP on single-end data (SRR299053/mouse) and paired-end data (SRR306438/human)
mappability | VAliBS | BS-Seeker2 | Bismark | BSMAP | ||
|---|---|---|---|---|---|---|
Bowtie2 | Bowtie2 | Bowtie | Bowtie2 | Bowtie | ||
single end | 82.88% | 72.94% | 71.89% | 70.31% | 73.15% | 72.84% |
paired end | 56.64% | 48.78% | 47.29% | 44.24% | 46.89% | 45.64% |