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Table 4 SortArray for the example

From: DCJ-RNA - double cut and join for RNA secondary structures

Index 0 1 2 3 4 5
SortArray[0] 5 6(b1) 2(a2) 3(a3) 5(a5)  
SortArray[1] 2 1(a1) 4(a4)    
SortArray[2] 1 6(b1)