Fig. 3
From: SimBA: A methodology and tools for evaluating the performance of RNA-Seq bioinformatic pipelines
BenchCT evaluation procedures. Each event is evaluated with benchCT with a specific procedure that allow approximate matching. For alignement, only overlap between the prediction and the truth is evaluated. For Splice junctions and Fusions we expect an overlap between the prediction and a candidate in the truth database with a limited agreement distance according to the threshold. For mutation (SNV and Indel), similar procedure is used, as well as the verification of the mutation. For SNVs we evaluate the mutated sequence and for insertions and deletions, the length of the mutation