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Table 2 Initial assessments of the effects of tuple length and Markov order of the background sequences on the performance of MaxBin+ \( {d}_2^S\mathrm{Bin} \) in terms of recall, precision and ARI for dataset 10genome-80×

From: Improving contig binning of metagenomic data using \( {d}_2^S \) oligonucleotide frequency dissimilarity

10genome-80× Recall(%) Precision(%) ARI(%)
MaxBin 93.48 93.48 90.96
MaxBin+\( {d}_2^S\mathrm{Bin} \) k = 4 r = 0 96.42 96.42 95.57
r = 1 93.99 93.99 90.86
r = 2 86.35 86.35 76.18
k = 5 r = 0 96.83 96.83 96.03
r = 1 95.40 95.40 93.19
r = 2 92.53 92.53 87.72
r = 3 59.71 60.91 37.18
k = 6 r = 0 96.93 96.93 96.05
r = 1 96.01 96.01 94.57
r = 2 94.24 94.24 91.40
r = 3 81.28 83.77 71.56
k = 7 r = 0 94.41 94.41 92.08
r = 1 93.26 93.26 91.92
r = 2 92.42 92.42 90.67
r = 3 65.88 77.73 50.48
k = 8 r = 0 88.26 82.94 80.04
r = 1 87.17 88.09 84.78
r = 2 87.19 87.12 82.73
r = 3 60.08 73.08 46.46
  1. The optimal numbers with respect Markov order are in bold