Table 4 Most relevant bacterial species for classification of IBD gut microbiota versus healthy gut microbiota samples
From: Interpretation of microbiota-based diagnostics by explaining individual classifier decisions
Species name | IS-pro peak(s) | Ranked top 15 by |
|---|---|---|
Alistipes finegoldii | 230/395/396/400/407 | all |
Alistipes putredinis | 235/236 | all |
Odoribacter splanchnicus | 307/308 | all |
unclassified Firmicute | 396 | all |
Escherichia coli | 735/821/827/828 | all |
unclassified Bacteroidete | 251 | svm, rf, nsc |
Lachnospiraceae sp. | 491/605 | svm, rf, lr |
Bacteroides vulgatus | 479 | svm, nsc |
Lactobacillus sp. | 478 | svm, lr |
Streptococcus sp. | 318 | svm, lr |
Bacteroides sp. | 474 | svm, lr |
Streptococcus sp. | 321 | nsc, lr |
Prevotella sp. | 438 | rf, nsc |
Bacteroides fragilis | 537 | rf, nsc |
Clostridium perfringens | 233/235 | rf, nsc |
Lactobacillus sp. | 244 | rf, nsc |
unclassified Firmicute | 156 | rf |