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Fig. 4 | BMC Bioinformatics

Fig. 4

From: VCFtoTree: a user-friendly tool to construct locus-specific alignments and phylogenies from thousands of anthropologically relevant genome sequences

Fig. 4

Scheme for transforming INDELs and complex variant types from 1000 Genomes Project into sequence for each individual. a Example showing how VCFtoTree transforms INDEL variant; b Example showing how VCFtoTree transforms multi allelic INDEL or variant type SNP,INDEL; c Example showing how VCFtoTree transforms multiple variants on the same locus. It transform the VCF line into a multi allelic VCF line, then follow the rule for multi allelic variant

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