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Fig. 5 | BMC Bioinformatics

Fig. 5

From: VCFtoTree: a user-friendly tool to construct locus-specific alignments and phylogenies from thousands of anthropologically relevant genome sequences

Fig. 5

Phylogeny of ERAP2 generated by VCFtoTree. The tree was rooted by midpoint rooting, and visualized by Archaeopteryx [18]. The phylogeny is for 5008 human haplotypes, Altai Neanderthal and Denisovan variations, as well as chimpanzee and rhesus macaque reference genomes. The size of the black triangles are proportional to the number of haplotypes in that lineage. The phylogenetic locations of Neanderthal and Denisovan genomes were highlighted by red arrows

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