Table 2 Execution times for the Greiff et al., [14] data set
From: VDJPipe: a pipelined tool for pre-processing immune repertoire sequencing data
|Sequences| | VDJPipe (1 core) | pRESTO (4 cores) |
|---|---|---|
25,000 | 5.7 s (0.1 s) | 1 m 43.2 s (2.5 s) |
250,000 | 1 m 7.5 s (0.5 s) | 17 m 35.1 s (15.6 s) |
1,085,869 | 8 m 22.5 s (4.6 s) | 89 m 14.9 s (2 m 18.5 s) |