From: Prediction of Human Phenotype Ontology terms by means of hierarchical ensemble methods
AUROC | F max | Precision | Recall | |
---|---|---|---|---|
Organ sub-ontology | ||||
TPR-W-RANKS | 0.89 | 0.40 | 0.34 | 0.48 |
TPR-W-SVM | 0.77 | 0.44 | 0.38 | 0.51 |
HTD-RANKS | 0.88 | 0.37 | 0.30 | 0.49 |
HTD-SVM | 0.75 | 0.43 | 0.37 | 0.49 |
PHENOstruct | 0.73 | 0.42 | 0.35 | 0.56 |
Clus-HMC-Ens | 0.65 | 0.41 | 0.39 | 0.43 |
PhenoPPIOrth | 0.52 | 0.20 | 0.27 | 0.15 |
SSVM →Dis→HPO | 0.49 | 0.23 | 0.16 | 0.41 |
RANKS | 0.87 | 0.30 | 0.23 | 0.43 |
SVM | 0.74 | 0.42 | 0.36 | 0.50 |
Inheritance sub-ontology | ||||
TPR-W-RANKS | 0.91 | 0.57 | 0.45 | 0.80 |
TPR-W-SVMs | 0.82 | 0.69 | 0.59 | 0.82 |
HTD-RANKS | 0.90 | 0.57 | 0.44 | 0.81 |
HTD-SVMs | 0.81 | 0.69 | 0.59 | 0.82 |
PHENOstruct | 0.74 | 0.74 | 0.68 | 0.81 |
Clus-HMC-Ens | 0.73 | 0.73 | 0.64 | 0.84 |
PhenoPPIOrth | 0.55 | 0.12 | 0.16 | 0.10 |
SSVM →Dis→HPO | 0.46 | 0.11 | 0.07 | 0.25 |
RANKS | 0.90 | 0.56 | 0.43 | 0.81 |
SVMs | 0.82 | 0.69 | 0.59 | 0.82 |
Onset sub-ontology | ||||
TPR-RANKS | 0.86 | 0.44 | 0.33 | 0.70 |
TPR-SVMs | 0.75 | 0.48 | 0.38 | 0.66 |
HTD-RANKS | 0.86 | 0.42 | 0.30 | 0.69 |
HTD-SVMs | 0.74 | 0.46 | 0.37 | 0.67 |
PHENOstruct | 0.64 | 0.39 | 0.31 | 0.52 |
Clus-HMC-Ens | 0.58 | 0.35 | 0.27 | 0.48 |
PhenoPPIOrth | 0.53 | 0.25 | 0.25 | 0.24 |
SSVM →Dis→HPO | 0.49 | 0.07 | 0.06 | 0.10 |
RANKS | 0.83 | 0.41 | 0.30 | 0.67 |
SVMs | 0.74 | 0.47 | 0.37 | 0.63 |