Table 5 LCS-TA results for predicted models of 5T5A structure in the sequence-independent mode
From: LCS-TA to identify similar fragments in RNA 3D structures
Model | MCQ threshold | 5° | 10° | 15° | 20° | 25° | ≥30° | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
LCS | MCQ | LCS | MCQ | LCS | MCQ | LCS | MCQ | LCS | MCQ | LCS | MCQ | ||
(c) Human category | |||||||||||||
Bujnicki_1 | 0 | n/a | 12 | 8.70° | 23 | 14.60° | 62 | 18.92° | 62 | 18.92° | 62 | 18.92° | |
Chen_1 | 0 | n/a | 10 | 9.05° | 14 | 13.53° | 25 | 18.63° | 62 | 22.88° | 62 | 22.88° | |
Das_1 | 10 | 4.61° | 11 | 8.95° | 23 | 13.20° | 44 | 19.72° | 62 | 21.41° | 62 | 21.41° | |
Ding_1 | 0 | n/a | 8 | 9.67° | 17 | 14.44° | 62 | 18.10° | 62 | 18.10° | 62 | 18.10° | |
Dokholyan_1 | 0 | n/a | 8 | 9.67° | 15 | 14.84° | 40 | 19.36° | 62 | 21.42° | 62 | 21.42° | |
RNAComposerH_1 | 0 | n/a | 14 | 9.56° | 24 | 14.35° | 62 | 18.04° | 62 | 18.04° | 62 | 18.04° | |
(d) Server category | |||||||||||||
3dRNA_1 | 0 | n/a | 0 | n/a | 7 | 14.71° | 15 | 19.38° | 27 | 24.21° | 40 | 28.16° | |
Lee_1 | 0 | n/a | 6 | 9.41° | 8 | 14.89° | 24 | 19.33° | 40 | 23.97° | 62 | 25.30° | |
RNAComposer_1 | 0 | n/a | 10 | 6.79° | 14 | 13.00° | 61 | 19.70° | 62 | 20.50° | 62 | 20.50° | |
RW3D_1 | 0 | n/a | 12 | 9.00° | 35 | 14.66° | 40 | 15.64° | 40 | 15.64° | 40 | 15.64° | |
simRNA_1 | 0 | n/a | 10 | 9.18° | 25 | 14.64° | 62 | 19.36° | 62 | 19.36° | 62 | 19.36° | |